Tomàs Montserrat-Ayuso

This study identifies HERV sequences as pervasive components of RNA regulatory architecture in the human transcriptome, revealing their roles in RNA processing and gene regulation.

The paper introduces HERVarium, a database annotating human endogenous retroviral LTRs and their regulatory features, revealing structural and functional patterns across the genome.

The paper annotates conserved protein domains in human endogenous retroviruses using HMMER and InterProScan, revealing full-length retrovirus-like domains in multiple HERV families.

This study uses scRNA-seq to analyze immune cell changes in porcine ileum during Salmonella Typhimurium infection, revealing altered cell composition and immunometabolic responses.

This study reveals contamination issues in public cell atlases due to suboptimal quality filtering and advocates for more rigorous quality control using intronic fraction or MALAT1 expression.