Author

Edgar Marroquin

Cornell UniversityORCID 0009-0009-0265-1214Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Assay:DNA methylation· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1

Frequent Co-Authors

Ana BertheliD· 2 shared Edward S. BuckleriD· 2 shared Eric CzechiD· 2 shared Jingjing ZhaiiD· 2 shared Matt PennelliD· 2 shared Zong-Yan LiuiD· 2 shared Aaron GokaslaniD· 1 shared B. R. CannoniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersBioinformatics

Ana BerthelORCID

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2 papers

Recent·Most cited

BioinformaticsCell GenomicsPeer-reviewedAug 7, 2026

PlantCAD2: a DNA foundation model for interpreting genomes across flowering plants

Jingjing Zhai, Aaron Gokaslan, Sheng-Kai Hsu…·Edward S. Buckler

PlantCAD2 is a DNA foundation model pre-trained on 65 angiosperm genomes, showing improved performance in evolutionary conservation and chromatin accessible region prediction compared to existing models.

DOI 10.1016/j.xgen.2026.101329

plant (other)DNA methylation

𝕏 PostBluesky

BioinformaticsbioRxivPreprintOct 31, 2025

GeneCAD: Plant Genome Annotation with a DNA Foundation Model

Zong-Yan Liu, Ana Berthel, Eric Czech…·Jingjing Zhai

GeneCAD improves gene annotation in plant genomes using a DNA foundation model, achieving higher accuracy than existing tools across diverse species.

DOI 10.1101/2025.10.31.685877

plant (other)whole-genome sequencing

𝕏 PostBluesky