Ana Berthel

PlantCAD2 is a DNA foundation model pre-trained on 65 angiosperm genomes, showing improved performance in evolutionary conservation and chromatin accessible region prediction compared to existing models.

GeneCAD improves gene annotation in plant genomes using a DNA foundation model, achieving higher accuracy than existing tools across diverse species.

The paper identifies selection signatures and predicts deleterious mutations in common bean using phylogenetic analysis and machine learning, showing correlations with agronomic traits.

The paper introduces PlantCaduceus, a DNA language model for plants, showing high transferability across species and improved performance in mutation prediction and variant identification.

The paper introduces the EN-TEx resource, which provides personal epigenomes and variant-impact models across multiple tissues, revealing allele-specific loci and their associations with GWAS loci.