Author

Heidi Lee

University of WashingtonORCID 0009-0009-1139-7000Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Organism:zebrafish· 2 Approach:experimental assay· 1 Approach:statistical model· 1

Frequent Co-Authors

Amy M TresenrideriD· 2 shared Cole TrapnelliD· 2 shared David KimelmaniD· 2 shared Eliza R. BarkaniD· 2 shared Madeleine DuraniD· 2 shared Nicholas C LammersiD· 2 shared Benjamin D HaageniD· 1 shared Brent Ewing· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersDevelopmental Biology

Amy M TresenriderORCID

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2 papers

Recent·Most cited

Developmental BiologybioRxivPreprintApr 3, 2025

Embryo-scale single-cell chemical transcriptomics reveals dependencies between cell types and signaling pathways

Eliza R. Barkan, Madeleine Duran, Nicholas C Lammers…·Cole Trapnell

The paper uses single-cell RNA-seq to study signaling pathway dependencies in zebrafish pectoral fin development, identifying new cell types and signaling relationships.

4 citations

zebrafishscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 3, 2025

A statistical framework for inferring genetic requirements from embryo-scale single-cell sequencing experiments

Madeleine Duran, Eliza R. Barkan, Amy M Tresenrider…·Cole Trapnell

This paper introduces two tools to infer genetic requirements from single-cell sequencing data of perturbed embryos, revealing new roles for transcription factors in zebrafish development.

6 citations

zebrafishscRNA-seq

𝕏 PostBluesky