Author

Molly Borowiak

Carnegie Mellon UniversityORCID 0009-0009-1195-7709Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Approach:matrix factorization· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Yun William YuiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 25, 2026

KuPID: Kmer-based Upstream Preprocessing of Long Reads forIsoform Discovery

Molly Borowiak, Yun William Yu

KuPID preprocesses long RNA-seq reads using kmer sketching to improve isoform discovery accuracy and reduce runtime.

DOI 10.64898/2025.12.05.692400

bulk RNA-seqlong-read sequencing

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