Author

Amit Jain

ORCID 0009-0009-2994-835XUnclaimed ORCID profile · follow to get notified of new preprints

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Amit Jain1 paper · Johns Hopkins University

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Organism:human· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1 Assay:whole-exome sequencing· 1

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Deniz TurgutiD· 1 shared Elif ArslaniD· 1 shared Güngör BudakiD· 1 shared Özem Kalay· 1 shared Sinem Demirkaya-BudakiD· 1 shared

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2024-2024 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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1 shared paperBioinformatics

Deniz TurgutORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintNov 14, 2024

Pangenome References Improve Biomarker Estimation from Tumor Sequencing Data

Elif Arslan, Deniz Turgut, Özem Kalay…·Amit Jain

This paper shows that using pangenome references improves biomarker estimation in tumor sequencing, reducing bias in TMB calculations for non-European populations.

DOI 10.1101/2024.11.14.623554

humanwhole-exome sequencing

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