BrainTACO: An Explorable Multi-Scale Multi-Modal Brain Transcriptomic And Connectivity Data Resource
Florian GanglbergeriD, Dominic KargliD, Markus Töpfer, Julien Hernandez-Lallement, Nathan LawlessiD, Francesc Fernández-AlbertiD, Wulf E. HaubensakiD, Katja BühleriD
Abstract
AbstractExploring the relationships between genes, brain circuitry, and behaviour is accelerated by the joint analysis of a heterogeneous sets form 3D imaging data, anatomical data, and brain networks at varying scales, res-olutions, and modalities. Hence, generating an integrated view, beyond the individual resources original purpose, requires the fusion of these data to a common space, and a visualization that bridges the gap across scales. However, despite ever expanding datasets, few plat-forms for integration and exploration of this heterogeneous data exist. To this end, we present the BrainTACO (Brain Transcriptomic And Connectivity Data) resource, a selection of heterogeneous, and multi-scale neurobiological data spatially mapped onto a common, hierarchical reference space, combined via a holistic data integration scheme. To access BrainTACO, we extended BrainTrawler, a web-based visual ana-lytics framework for spatial neurobiological data, with comparative visualizations of multiple resources for gene expression dissection of brain networks with an unprecedented coverage. Using this platform, allows to straightforward explore and extract brain data for identifying potential genetic drivers of connectivity in both mice and humans that may contribute to the discovery of dysconnectivity phenotypes. Hence, BrainTACO reduces the need for time-consuming manual data aggregation often required for computational analyses in script based toolboxes, and supports neuroscientists by focusing on leveraging the data instead of preparing it.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 3
- FWCI
- 0.41
- Field percentile
- top 48%
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A Data Structure for real-time Aggregation Queries of Big Brain Networks
Florian Ganglberger, Joanna Kaczanowska, … Katja Bühler·NeuroinformaticsPeer-reviewed·Jun 25, 2019
- iBrAVE: a unified framework for 3D interactive and integrative analysis of brain atlas data across modalities and scales
Yufan Wang, Ming-Quan Chen, … Xu-Fei Du·bioRxiv·Oct 4, 2025
- Circuit Mining in Transcriptomics Data
Tobias Peherstorfer, Sophia Ulonska, … Katja Bühler·IEEE Computer Graphics and ApplicationsPeer-reviewed·Jul 31, 2025
- OMICON: a community resource for studying gene coexpression networks in normal and neoplastic human brain samples
Rebecca Eliscu, Gugene Kang, … Patrick G. Schupp·bioRxiv·Sep 1, 2026
- A hands-on tutorial on network and topological neuroscience
Eduarda Gervini Zampieri Centeno, Giulia Moreni, … Fernando A. N. Santos·Brain Structure and FunctionPeer-reviewed·Feb 10, 2022
- Open datasets and code for multi-scale relations on structure, function and neuro-genetics in the human brain
Antonio Jiménez-Marín, Ibai Palacio Diez, … Jesús M. Cortés·Scientific DataPeer-reviewed·Feb 29, 2024