A metapopulation framework integrating landscape heterogeneity to model an airborne plant pathogen: the case of brown rot of peach in France

Abstract

Plant disease dynamics are driven by the concurrent interplay of host susceptibility, pathogen presence, and environmental conditions. While host susceptibility and local environmental conditions can readily be characterised, the transmission of an airborne pathogen depends on the biotic and abiotic conditions of the surrounding environment. Here, we propose an original metapopulation framework integrating landscape heterogeneity, in terms of climate and host density, where local populations of plant hosts are connected via air-masses which allow pathogen dispersal. We explicitly account for climatic drivers affecting pathogen release and survival while modelling aerial dispersal using Lagrangian simulations, as well as host phenology and infection. We calibrate the model parameters according to the literature and using Approximate Bayesian Computation against observations of brown rot incidence in French peach orchards from 2001-2020 across an area of 50,000 km2. We used the model to produce maps of risk, distinguishing site dangerousness (risk of causing secondary infection in other sites) and vulnerability (risk of becoming infected) across the our study area. We find that most dangerous and vulnerable sites are located along the Rhone Valley, due to the concurrence of high density of peach cultivation, a suitable climate and persistent airborne connections. Our work represents a first step to integrate metapopulation theory, epidemiology and air-mass movements to inform plant protection strategies, and could be adapted to optimize crop protection under future climate projections.