bioRxivCell BiologyPreprint
Assessing the Involvement of Platelet Degranulation in the Therapeutic Properties of Exosome Derived from Amniotic Epithelial Cells through Enrichment and Interaction Network Analysis
M. Valizadeh, A. Haider Bangash, D. Hayati, A. Jafari, H. Rajabi-Maham
Abstract
Platelet degranulation allows the release of large secretable pools of biologically active proteins which are critical in wound healing initiation and angiogenesis. Exosomes, which can transport a diverse suite of macromolecules, derived from amniotic epithelial cells (AEC-Exo) improve wound healing and angiogenesis. However, the underlying mechanisms are still unclear. In this investigation, we performed a user-friendly bioinformatics analysis system to identify association among the angiogenic and wound healing effects of AEC-Exo treatments. To this end, FunRich software was used, and linked to the Universal Protein Resource (UniProt) as a background database. Several enrichment analyses, including biological process, cellular component, molecular function, and protein domains were conducted on AEC-Exo proteome. Furthermore, to identify the proteins involved in platelet degranulation and evaluate protein-protein association information, comparative analyses and interaction network analyses were illustrated using the NCBI BioSystems, ExoCarta, and STRING databases. Our results indicated the statistically significant association between the proteome in AEC-Exo, platelet degranulation, and their corresponding processes. Therefore, the involvement of platelet degranulation in AEC-Exo proteins may elucidate the angiogenic and wound-healing effects of AEC-Exo treatments.
- organism: human
- assay: proteomics
- research focus: cell-cell communication
- research focus: differential expression
- research focus: protein folding & dynamics
- research focus: cell type annotation
- approach: statistical model
- approach: biophysical modeling
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