An integrated platform for simultaneous wide-field voltage/calcium imaging and fMRI (EPI & ZTE) reveals neuronal infraslow dynamics underlying functional connectivity
Wen‐Ju PaniD, Lauren DaleyiD, Harrison N. WattersiD, Lisa Meyer-BaeseiD, Kaudinya Gopinath, Dieter JaegeriD, Shella Dawn KeilholziD
Abstract
Wide-field optical imaging acquired simultaneously with functional MRI (fMRI) has the ability to provide unprecedented insight into the neural origins of time-varying whole-brain activity. Simultaneously linking cellular-scale activity to whole-brain fMRI remains challenging due to optical access, RF coil placement, and transmission constraints in the MRI environment. We present an integrated platform that combines a long-distance tube-lens optical path (>98% transmission), a chronically stable optically-fused cranial window, and a subject-conformal RF surface coil compatible with both echo planar imaging (EPI) and zero-echo-time (ZTE) fMRI. The system supports concurrent wide-field imaging of genetically encoded voltage or calcium indicators concurrently with intrinsic hemoglobin signals. In individual mice, wide-field optical and fMRI measures yield concordant functional connectivity, and cross-modal timing analyses demonstrate that neuronal infraslow dynamics (<0.1 Hz) underlie the majority of fMRI connectivity, after removing hemodynamic crosstalk. The platform's sensitivity, chronic stability, and sequence flexibility broaden access to cellular-to-whole-brain investigations across basic and translational neuroimaging.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Organism
- Assay
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Simultaneous mesoscopic Ca2+ imaging and fMRI: Neuroimaging spanning spatiotemporal scales
Evelyn M. R. Lake, Xinxin Ge, … Robert Todd Constable·bioRxiv·Mar 11, 2019
- Concurrent EEG- and fMRI-derived functional connectomes exhibit linked dynamics
Jonathan Wirsich, Anne‐Lise Giraud, Sepideh Sadaghiani·NeuroImagePeer-reviewed·May 29, 2020
- Simultaneous single-cell calcium imaging of neuronal population activity and brain-wide BOLD fMRI
Rik L.E.M. Ubaghs, Roman Boehringer, … Benjamin F. Grewe·Nature MethodsPeer-reviewed·Jul 15, 2026
- Capturing volumetric dynamics at high speed in the brain by confocal light field microscopy
Zhenkun Zhang, Lu Bai, … Kai Wang·Nature BiotechnologyPeer-reviewed·Aug 10, 2020
- Connectomes across temporal scales with simultaneous wide-field optical imaging and resting-state functional MRI
Wen‐Ju Pan, Lauren Daley, … Shella Dawn Keilholz·bioRxiv·Feb 3, 2026
- Wide-Field Calcium and Flavoprotein Autofluorescence Imaging in Living Mice
Takamasa Yoshida·bioRxiv·Aug 31, 2026