IEEE International Conference on Bioinformatics and Bioengineering (BIBE)BioinformaticsPeer-reviewed journal article
A Novel Local Ablation Approach for Explaining Multimodal Classifiers
Charles A. EllisiD, Darwin A. Carbajal, Rongen ZhangiD, Mohammad SE Sendi, Robyn L. MilleriD, Vince D. CalhouniD, May Dongmei WangiD
Abstract
With the growing use of multimodal data for deep learning classification in healthcare research, more studies have begun to present explainability methods for insight into multimodal classifiers. Among these studies, few have utilized local explainability methods, which could provide (1) insight into the classification of each sample and (2) an opportunity to better understand the effects of demographic and clinical variables within datasets (e.g., medication of subjects in electrophysiology data). To the best of our knowledge, this opportunity has not yet been explored within multimodal classification. We present a novel local ablation approach that shows the importance of each modality to the correct classification of each class and explore the effects of demographic and clinical variables upon the classifier. As a use-case, we train a convolutional neural network for automated sleep staging with electroencephalogram (EEG), electrooculogram (EOG), and electromyogram (EMG) data. We find that EEG is the most important modality across most stages, though EOG is particular important for non-rapid eye movement stage 1. Further, we identify significant relationships between the local explanations and subject age, sex, and state of medication which suggest that the classifier learned specific features associated with these variables across multiple modalities and correctly classified samples. Our novel explainability approach has implications for many fields involving multimodal classification. Moreover, our examination of the degree to which demographic and clinical variables may affect classifiers could provide direction for future studies in automated biomarker discovery.
- assay: electronic health records
- research focus: benchmarking
- research focus: cell type annotation
- research focus: clustering
- research focus: differential expression
- approach: deep learning
- approach: statistical model
- Citations
- 15
- FWCI
- 1.62
- Field percentile
- top 13%
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