bioRxivBiophysicsPreprint
Hamiltonian distributed chaos in DNA
Abstract
It is shown that distributed chaos, generated by Hamiltonian DNA dynamics with spontaneously broken time translational symmetry, imprints itself on the DNA sequence of Arabidopsis thaliana (a model plant for genetic sequencing and mapping) and of the NRXN1 and BRCA2 human genes (as an example). The base-stacking interactions in the DNA duplex, degenerate codon groups and a relation to the KAM theory have been discussed in this context.
- organism: Arabidopsis
- organism: human
- assay: DNA methylation
- assay: whole-genome sequencing
- research focus: chromatin & epigenetic regulation
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- DNA sequence is a major determinant of tetrasome dynamics
O. Ordu, A. Lusser, N. H. Dekker·bioRxiv·May 27, 2019
- A new model on DNA structure and thermal denaturation
LUO Liaofu, YANG Guochen·bioRxiv·Aug 7, 2018
- Unitary Structure of Palindromes in DNA
M. A. Tibatan, M. Sarisaman·bioRxiv·Jul 21, 2021
- The emergence of sequence-dependent structural motifs in stretched, torsionally constrained DNA
J. W. Shepherd, R. J. Greenall, … M. Leake·bioRxiv·Apr 4, 2019
- Rotational settings quantize nucleosome movement by chromatin regulators
van Es La, Abby Trouth, … Srinivas Ramachandran·bioRxiv·Jul 28, 2026
- An Associative Memory Hamiltonian Model for DNA and Nucleosomes
W. Lu, J. N. Onuchic, M. Di Pierro·bioRxiv·Oct 15, 2022