medRxivGenetic & Genomic MedicinePreprint
Uncovering the Genetic Architecture of Optic Nerve Integrity Estimates through Genome-wide Association Study Meta-analyses
Asma M. AmaniD, Santiago Díaz‐TorresiD, Samantha Sze‐Yee LeeiD, Sjoerd J. Driessen, Victor A. de VriesiD, Frank C. T. van der HeideiD, Antonia KolovosiD, Joshua M. SchmidtiD, Henry N. MarshalliD, Lania Saleh, Alicia SchulzeiD, Gabriëlla A.M. BloklandiD, Carroll A.B. WebersiD, Carla KalleniD, Anke WesseliusiD, Ilja C.W. ArtsiD, Freekje van AsteniD, Mathias GorskiiD, Martina E. ZimmermanniD, Klaus J. StarkiD, Iris M. HeidiD, Terri L. YoungiD, Louis Robert PasqualeiD, Ayellet V. SegrèiD, Janey L. WiggsiD, , Puya GharahkhaniiD
Abstract
We conducted the first genome-wide association meta-analyses of global and sectoral peripapillary retinal nerve fibre layer (pRNFL) thickness and Bruchs membrane opening-minimum rim width (BMO-MRW), the major optic nerve head structural and neurodegeneration biomarkers, including up to 25,942 and 12,080 participants, respectively, from the International Glaucoma Genetics Consortium. We identified 9 global pRNFL thickness and 9 global BMO-MRW loci, along with 28 and 19 loci for pRNFL and BMO-MRW sectors, respectively, comprising both shared and sector-specific loci. To identify intraocular pressure (IOP)-independent drug targets, global pRNFL thickness and BMO-MRW were conditioned on IOP. IOP-independent loci were then prioritised to identify candidate causal genes using transcriptome-wide association study and colocalization analysis. Several genes, such as NMNAT2 and TRIOBP, had robust associations with both phenotypes, with potential IOP-independent therapeutic translation for glaucoma. Overall, we identified novel loci for pRNFL thickness and BMO-MRW, highlighting potential drug-target genes acting independently from IOP, and elucidating genetic differences among pRNFL sectors.
- organism: human
- assay: GWAS summary statistics
- research focus: GWAS / association mapping
- approach: statistical model
- Citations
- 1
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Genetic discovery using deep learning-derived optic nerve integrity phenotypes
Asma M. Aman, Eslam Zaher, … Puya Gharahkhani·medRxiv·Sep 10, 2026
- Genetic variation affects morphological retinal phenotypes extracted from UK Biobank Optical Coherence Tomography images
Hannah Currant, Pirro G. Hysi, … Anthony P. Khawaja·PLoS GeneticsPeer-reviewed·May 12, 2021
- High throughput functional profiling of genes at intraocular pressure loci reveals distinct networks for glaucoma
Connor J Greatbatch, Qinyi Lu, … Alex William Hewitt·Human Molecular GeneticsPeer-reviewed·Jan 10, 2024
- Integrating genetic regulation and single-cell expression with GWAS prioritizes causal genes and cell types for glaucoma
Andrew R. Hamel, Wenjun Yan, … Ayellet V. Segrè·Nature CommunicationsPeer-reviewed·Jan 9, 2024
- Genome-Wide Association Study Finds Multiple Loci Associated with Intraocular Pressure in HS Rats
Samuel Fowler, Tengfei Wang, … Monica M. Jablonski·Frontiers in GeneticsPeer-reviewed·Jan 29, 2023
- Genomic Locus Modulating IOP in the BXD RI Mouse Strains
Rebecca King, Ying Li, … Eldon E. Geisert·G3 Genes Genomes GeneticsPeer-reviewed·Mar 1, 2018