Sign in
EcologybioRxiv

funspace: an R package to build, analyze and plot functional trait spaces

C. P. Carmona, N. Pavanetto, G. Puglielli

Abstract

O_LIFunctional trait space analyses are pivotal to define species ecological strategies across the tree of life. Yet, there is no single application that streamlines the many sometimes-troublesome steps needed to build and analyze functional trait spaces. C_LIO_LITo fill this gap, we propose funspace, an R package to easily handle bivariate and multivariate (PCA-based) functional trait space analyses. The six functions that constitute the package can be grouped in three modules: Building and exploring, Mapping, and Plotting. C_LIO_LIThe building and exploring module defines the main features of a functional trait space (e.g., functional diversity metrics) by leveraging kernel density-based methods. The mapping module uses general additive models to map how a target variable distributes within a trait space. The plotting module provides many options for creating flexible and high-quality figures representing the outputs obtained from previous modules. We provide a worked example to demonstrate a complete funspace workflow. C_LIO_LIfunspace will provide researchers working with functional traits across the tree of life with an indispensable asset to easily explore: (i) the main features of any functional trait space, (ii) the relationship between a functional trait space and any other biological or non-biological factor that might contribute to shaping species functional diversity. C_LI

PDFDOI

02 /Specification & Classification

Click any tag to browse matching papers

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.

Similarity Map
SelectedSame fieldCross-field
THISLock '26Mammola '20Carpentier '20Siefert '23Guillerme '19Sathicq '19
58% semantic matchPlant Biology
Sarah C. L. Lock, Marina I. Knight, Seth J Davis+1 more·Bioinformatics Advances·Jan 1, 2026