Bioinformatics AdvancesPlant BiologyPeer-reviewed journal article
TimeTraits: extracting functional traits from biological time-series in R
Sarah C. L. LockiD, Marina I. KnightiD, Seth J DavisiD, Daphne EzeriD
Abstract
SummaryTimeTraits provides a series of functions to enable the extraction of parameters from time series data using Functional Data Analysis methods. We demonstrate its utility in dissecting the changes in curve shape of a circadian clock bioluminescence marker, following a photoperiod shift in wildtype and phyB Arabidopsis. Availability and ImplementationTimeTraits is available in CRAN: https://cran.r-project.org/web/packages/TimeTraits/readme/README.html
- organism: Arabidopsis
- assay: bulk RNA-seq
- research focus: differential expression
- approach: statistical model
- Citations
- 0
- FWCI
- 0.00
- Field percentile
- top 44%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- PlotTwist - a web app for plotting and annotating time-series data
J. Goedhart·bioRxiv·Sep 3, 2019
- funspace: an R package to build, analyze and plot functional trait spaces
C. P. Carmona, N. Pavanetto, G. Puglielli·bioRxiv·Mar 17, 2023
- MetaCycle: an integrated R package to evaluate periodicity in large scale data
Gang Wu, Ron C Anafi, … John B Hogenesch·bioRxiv·Feb 19, 2016
- SER: an R package to compute environmental regime over a certain time period
- habtools: an R package to calculate 3D metrics for surfaces and objects
Nina M. D. Schiettekatte, Mollie Asbury, … Joshua S. Madin·Methods in Ecology and EvolutionPeer-reviewed·Apr 7, 2025
- catch22: CAnonical Time-series CHaracteristics
Carl H Lubba, Sarab S. Sethi, … Nick S. Jones·Data Mining and Knowledge DiscoveryPeer-reviewed·Aug 9, 2019