bioRxivCell Biology
ETDB-Caltech: a blockchain-based distributed public database for electron tomography
D. R. Ortega, C. M. Oikonomou, H. J. Ding, P. Rees-Lee, Alexandria, G. J. Jensen
Abstract
Three-dimensional electron microscopy techniques like electron tomography provide valuable insights into cellular structures, and present significant challenges for data storage and dissemination. Here we explored a novel method to publicly release more than 11,000 such datasets, more than 30 TB in total, collected by our group. Our method, based on a peer-to-peer file sharing network built around a blockchain ledger, offers a distributed solution to data storage. In addition, we offer a user-friendly browser-based interface, https://etdb.caltech.edu, for anyone interested to explore and download our data. We discuss the relative advantages and disadvantages of this system and provide tools for other groups to mine our data and/or use the same approach to share their own imaging datasets.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- EMPIAR: The Electron Microscopy Public Image Archive
Andrii Iudin, Paul K Korir, … Ardan Patwardhan·Nucleic Acids ResearchPeer-reviewed·Oct 25, 2022
- EMDB - The Electron Microscopy Data Bank
Jack Turner, Sanja Abbott, … Xiaodan Ma·Nucleic Acids ResearchPeer-reviewed·Oct 20, 2023
- Chart Builder: An Interactive Tool for User Driven Data Visualization in the Electron Microscopy Data Bank
Neli Fonseca, Amudha Kumari Duraisamy, … Kyle L. Morris·Frontiers in BioinformaticsPeer-reviewed·Mar 6, 2026
- A collection of yeast cellular electron cryotomography data
L. Gan, C. T. Ng, … S. Cai·GigaSciencePeer-reviewed·Jun 27, 2019
- A new cryo-EM system for electron 3D crystallography by eEFD
Koji Yonekura, Tetsuya Ishikawa, Saori Maki-Yonekura·Journal of Structural BiologyPeer-reviewed·Mar 27, 2019
- Electron Event Representation (EER) data enables efficient cryoEM file storage with full preservation of spatial and temporal resolution
H. Guo, E. Franken, … J. L. Rubinstein·bioRxiv·Apr 28, 2020