The Cellular Underpinnings of the Human Cortical Connectome
Xi-Han ZhangiD, Kevin M. AndersoniD, Hao-Ming DongiD, Sidhant ChopraiD, Elvisha DhamalaiD, Prashant S. EmaniiD, Mark GersteiniD, Daniel S. MarguliesiD, Avram J. HolmesiD
Abstract
The functional properties of the human brain arise, in part, from the vast assortment of cell types that pattern the cortex. The cortical sheet can be broadly divided into distinct networks, which are further embedded into processing streams, or gradients, that extend from unimodal systems through higher-order association territories. Here, using transcriptional data from the Allen Human Brain Atlas, we demonstrate that imputed cell type distributions are spatially coupled to the functional organization of cortex, as estimated through fMRI. Cortical cellular profiles follow the macro-scale organization of the functional gradients as well as the associated large-scale networks. Distinct cellular fingerprints were evident across networks, and a classifier trained on post-mortem cell-type distributions was able to predict the functional network allegiance of cortical tissue samples. These data indicate that the in vivo organization of the cortical sheet is reflected in the spatial variability of its cellular composition.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 68
- FWCI
- 16.58
- Field percentile
- top 1%
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Comprehensive in situ mapping of human cortical transcriptomic cell types
Christoffer Mattsson Langseth, Daniel Gyllborg, … Mats F. Nilsson·Communications BiologyPeer-reviewed·Aug 24, 2021
- Integrated Classification of Cortical Cells and Quantitative Projectomic Mapping Unveil Organizational Principles of Brain-Wide Connectomes at Single Cell Level
Yun Wang, Hsien-Chi Kuo, … Staci A. Sorensen·bioRxiv·May 8, 2025
- Topographic organization of the human subcortex unveiled with functional connectivity gradients
Ye Tian, Daniel S. Margulies, … Andrew Zalesky·Nature NeurosciencePeer-reviewed·Sep 28, 2020
- Charting the Spatial Transcriptome of the Human Cerebral Cortex at Single-Cell Resolution
Songren Wei, Meng Luo, … Qinghua Jiang·Nature CommunicationsPeer-reviewed·Aug 19, 2025
- A cortical wiring space links cellular architecture, functional dynamics and hierarchies in humans
Casey Paquola, Jakob Seidlitz, … Boris C. Bernhardt·bioRxiv·Jan 8, 2020
- Core and Matrix Thalamic Sub-Populations Relate to Spatio-Temporal Cortical Connectivity Gradients
Eli J. Müller, Brandon Munn, … James M. Shine·NeuroImagePeer-reviewed·Aug 11, 2020