Brain Structure and FunctionNeurosciencePeer-reviewed journal article
Inter-slice leakage and intra-slice aliasing in simultaneous multi-slice echo-planar images
Carolyn Beth McNabbiD, Michael LindneriD, Shan SheniD, Laura Grace BurgessiD, Kou MurayamaiD, Tom JohnstoneiD
Abstract
Simultaneous multi-slice (SMS) imaging is a popular technique for increasing acquisition speed in echo-planar imaging (EPI) fMRI. However, SMS data are prone to motion sensitivity and slice leakage artefacts, which spread signal between simultaneously acquired slices. Relevant to motion sensitivity, artefacts from moving anatomic structures propagate along the phase-encoding (PE) direction. This is particularly relevant for eye movement. As signal from the eye is acquired along with signal from simultaneously excited slices during SMS, there is potential for signal to spread in-plane and between spatially remote slices. After identifying an artefact temporally coinciding with signal fluctuations in the eye and spatially distributed in correspondence with multiband slice acceleration and parallel imaging factors, we conducted a series of small experiments to investigate eye movement artefacts in SMS data and the contribution of PE direction to the invasiveness of these artefacts. Five healthy adult volunteers were scanned during a blinking task using a standard SMS-EPI protocol with posterior-to-anterior (P>>A), anterior-to-posterior (A>>P) or right-to-left (R>>L) PE direction. The intensity of signal fluctuations (artefact severity) was measured at expected artefact positions and control positions. We demonstrated a direct relationship between eye movements and artefact severity across expected artefact regions. Within-brain artefacts were apparent in P>>A- and A>>P-acquired data but not in R>>L data due to the shift in artefact positions. Further research into eye motion artefacts in SMS data is warranted but researchers should exercise caution with SMS protocols. We recommend rigorous piloting of SMS protocols and switching to R>>L/L>>R PE where feasible.
- Citations
- 29
- FWCI
- 2.07
- Field percentile
- top 12%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Impacts of Simultaneous Multislice Acquisition on Sensitivity and Specificity in fMRI
Benjamin B. Risk, Mary C. Kociuba, Daniel B. Rowe·NeuroImagePeer-reviewed·Feb 3, 2018
- EPI distortion correction for simultaneous human brain stimulation and imaging at 3T
Hyuntaek Oh, Jung Hwan Kim, Jeffrey M. Yau·Journal of Neuroscience MethodsPeer-reviewed·Aug 18, 2019
- Improved Statistical Efficiency of Simultaneous Multi-Slice fMRI by Reconstruction with Spatially Adaptive Temporal Smoothing
Mark Chiew, Karla L. Miller·NeuroImagePeer-reviewed·Sep 5, 2019
- Temporal signal-to-noise changes in combined multiband- and slice-accelerated echo-planar imaging with a 20- and 64-channel coil
Philipp Seidel, Seth M. Levine, … Jens Volkmar Schwarzbach·Scientific ReportsPeer-reviewed·Mar 26, 2020
- Single-shot Echo Planar Time-resolved Imaging for multi-echo functional MRI and distortion-free diffusion imaging
Z. Dong, L. L. Wald, … F. Wang·bioRxiv·Jan 24, 2024
- Now you see it, now you don't: optimal parameters for interslice stimulation in concurrent TMS-fMRI
Catriona L. Scrivener, J. B. Jackson, … Alexandra Woolgar·bioRxiv·May 28, 2021