Frontiers in NeurologyBioinformaticsPeer-reviewed journal article
Algorithm for Reliable Detection of Beat Onsets in Cerebral Blood Flow Velocity Signals
Nicolas CanaciD, Mina RanjbaraniD, Michael J. O’Brien, Shadnaz AsgariiD, Fabien ScalzoiD, Samuel ThorpeiD, Kian JalaleddiniiD, Corey M. ThibeaultiD, Seth J. Wilk, Robert HamiltoniD
Abstract
Transcranial Doppler (TCD) ultrasound has been demonstrated to be a valuable tool for assessing cerebral hemodynamics via measurement of cerebral blood flow velocity (CBFV), with a number of established clinical indications. However, CBFV waveform analysis depends on reliable pulse onset detection, an inherently difficult task for CBFV signals acquired via TCD. We study the application of a new algorithm for CBFV pulse segmentation, which locates pulse onsets in a sequential manner using a moving difference filter and adaptive thresholding. The test data set used in this study consists of 92,012 annotated CBFV pulses, whose quality is representative of real world data. On this test set, the algorithm achieves a true positive rate of 99.998% (2 false negatives), positive predictive value of 99.998% (2 false positives), and mean temporal offset error of 6.10 {+/-} 4.75 ms. We do note that in this context, the way in which true positives, false positives, and false negatives are defined caries some nuance, so care should be taken when drawing comparisons to other algorithms. Additionally, we find that 97.8% and 99.5% of onsets are detected within 10 ms and 30 ms, respectively, of the true onsets. The algorithms performance in spite of the large degree of variation in signal quality and waveform morphology present in the test data suggests that it may serve as a valuable tool for the accurate and reliable identification of CBFV pulse onsets in neurocritical care settings.
- Citations
- 12
- FWCI
- 1.36
- Field percentile
- top 20%
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Objective Assessment of Beat Quality in Transcranial Doppler Measurement of Blood Flow Velocity in Cerebral Arteries
Kian Jalaleddini, Nicolas Canac, … Robert Hamilton·IEEE Transactions on Biomedical EngineeringPeer-reviewed·Jun 17, 2019
- Comparison of Transcranial Doppler Ultrasound with Computational Fluid Dynamics: Responses to Physiological Stimuli
H. T. Caddy, H. J. Thomas, … D. J. Green·bioRxiv·Feb 22, 2022
- Method for Modeling Residual Variance in Biomedical Signals Applied to Transcranial Doppler Ultrasonography Waveforms
K. Jalaleddini, S. G. Thorpe, … R. B. Hamilton·bioRxiv·May 9, 2019
- Functional ultrasound speckle decorrelation-based velocimetry of the brain
J. Tang, D. D. Postnov, … D. A. Boas·bioRxiv·Mar 31, 2020
- Vascular waveform analysis using Bayesian pulse deconvolution
Parker S. Ruth, Tommy DeBenedetti, … Emily B. Fox·npj Digital MedicinePeer-reviewed·Sep 10, 2026
- DBD-RCO: Derivative Based Detection And Reverse Combinatorial Optimization To Improve Heart Beat Detection For Wearable Devices
Andrea Bizzego, Cesare Furlanello·bioRxiv·Mar 21, 2017