bioRxivPlant Biology
The diurnal transcriptional landscape of the microalga Tetradesmus obliquus
B. Carreres, G. M. Leon Saiki, P. Schaap, I. M. Remmers, D. van der Veen, V. A. Martins dos Santos, R. H. Wijffels, D. Martens, M. Suarez-Diez
Abstract
Tetradesmus obliquus is a promising oleaginous microalga. We functionally annotated its genome and characterized the transcriptional landscape of T. obliquus adapted to 16:8h light dark (LD) cycles in turbidostat culture conditions at very high temporal resolution (1h intervals). Revealing a cycle of cellular events, six distinct expression profiles were obtained, each with transcriptional phenotypes correlating with measurements of biochemical composition.\n\nThe impact of starch deficiency was studied using the starchless mutant slm1. Significant changes in the transcriptional landscape were observed. Starch deficiency resulted in incapacity to supply energy during dark period, resulting in early or late time shift for energy demanding processes. Our study provides new perspectives on the role of starch and the adaptation to LD cycles of oleaginous microalgae.
- organism: plant (other)
- assay: bulk RNA-seq
- research focus: cell type annotation
- research focus: differential expression
- research focus: gene regulatory network inference
- approach: experimental assay
- approach: statistical model
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