Hidden infections: Linking parasite ecology, fish health and stakeholder perceptions in Nile tilapia aquaculture in central Kenya

Parasite infections in farmed fish may remain unrecognised when fish-health assessment relies mainly on visible signs. We investigated metazoan parasite occurrence, parasite diversity and community composition, associations between gill-parasite burden and histological alterations, and stakeholder recognition of fish-health problems in Nile tilapia (Oreochromis niloticus) aquaculture in central Kenya. We examined 157 fish from 20 farms, assessed gill histology in 137 fish, measured water quality once per farm, and collected questionnaire and interview data from 48 stakeholders. Five metazoan parasite groups were recorded, with monopisthocotylans the most prevalent (36.3%). Higher monopisthocotylan burden was associated with a greater cumulative number of gill lesion types (odds ratio 1.86, 95% CI 1.43-2.42, p < 0.001), whereas copepod burden was not. Parasite diversity was higher in the larger operational pond category across all three Hill-number orders (p = 0.006-0.008), and parasite-community composition differed between categories (PERMANOVA, p = 0.034), although these comparisons were exploratory because only four farms were in the larger category and farm category overlapped with county. Single-time-point water-quality measurements showed no clear associations with parasite burden, diversity or community composition after multiple-testing correction. Farmers and fisheries or extension officers recognised signs of poor fish health but rarely identified parasites as a specific cause, and routine diagnostic confirmation was uncommon. The findings reveal a gap between laboratory detection of parasite-associated gill alterations and farm-level recognition and diagnosis.