Tractostorm: Rater reproducibility assessment in tractography dissection of the pyramidal tract
François RheaultiD, Alessandro DE BENEDICTISiD, Alessandro DaducciiD, Chiara MaffeiiD, Chantal M. W. TaxiD, David RomascanoiD, Eduardo CaverzasiiD, Félix C. Morency, Francesco CorrivettiiD, Franco PestilliiD, Gabriel GirardiD, Guillaume TheaudiD, Ilyess ZemmouraiD, Janice HauiD, Kelly Glavin, Kesshi JordaniD, Kristofer Pomiecko, Maxime ChamberlandiD, Muhamed BarakovićiD, Nil Goyette, Philippe PouliniD, Quentin ChenotiD, Sandip S. PanesariD, Silvio SarubboiD, Laurent PetitiD, Maxime DescoteauxiD
Abstract
Investigative studies of white matter (WM) brain structures using diffusion MRI (dMRI) tractography frequently require manual WM bundle segmentation, often called \"virtual dissection\". Human errors and personal decisions make these manual segmentations hard to reproduce, which have not yet been quantified by the dMRI community. The contribution of this study is to provide the first large-scale, international, multi-center variability assessment of the \"virtual dissection\" of the pyramidal tract (PyT). Eleven (11) experts and thirteen (13) non-experts in neuroanatomy and \"virtual dissection\" were asked to perform 30 PyT segmentation and their results were compared using various voxel-wise and streamline-wise measures. Overall the voxel representation is always more reproducible than streamlines ({approx}70% and {approx}35% overlap respectively) and distances between segmentations are also lower for voxel-wise than streamline-wise measures ([3/4]3mm and [3/4]umm respectively). This needs to be seriously considered before using tract-based measures (e.g. bundle volume versus streamline count) for an analysis. We show and argue that future bundle segmentation protocols need to be designed to be more robust to human subjectivity. Coordinated efforts by the diffusion MRI tractography community are needed to quantify and account for reproducibility of WM bundle extraction techniques in this era of open and collaborative science.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 1
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Tractography dissection variability: what happens when 42 groups dissect 14 white matter bundles on the same dataset?
Kurt G. Schilling, François Rheault, … Roza G. Bayrak·NeuroImagePeer-reviewed·Aug 22, 2021
- An atlas of white matter anatomy, its variability, and reproducibility based on Constrained Spherical Deconvolution of diffusion MRI
Ahmed Radwan, Stefan G. Sunaert, … Louise Emsell·NeuroImagePeer-reviewed·Feb 26, 2022
- Evaluating the reliability of human brain white matter tractometry
John Kruper, Jason D. Yeatman, … Ariel Rokem·Aperture NeuroPeer-reviewed·Nov 17, 2021
- Fiber tractography bundle segmentation depends on scanner effects, vendor effects, acquisition resolution, diffusion sampling scheme, diffusion sensitization, and bundle segmentation workflow
Kurt G. Schilling, Chantal M. W. Tax, … Bennett A. Landman·NeuroImagePeer-reviewed·Aug 4, 2021
- Tractometry reproducibility and generalizability across scanners, scanner models, and acquisition protocols
Daiki Taguma, Isao Yokoi, … Hiromasa Takemura·bioRxiv·May 18, 2026
- TractEM: Fast Protocols for Whole Brain Deterministic Tractography-Based White Matter Atlas
Roza G. Bayrak, Xuan Wang, … Bennett A. Landman·bioRxiv·Jan 10, 2020