An Rshiny app for modelling environmental DNA data: accounting for false positive and false negative observation error.

Abstract

O_LIEnvironmental DNA (eDNA) surveys have become a popular tool for assessing the distribution of species. However, it is known that false positive and false negative observation error can occur at both stages of eDNA surveys, namely the field sampling stage and laboratory analysis stage. C_LIO_LIWe present an RShiny app that implements the Griffin et al. (2019) statistical method, which accounts for false positive and false negative errors in both stages of eDNA surveys. Following Griffin et al. (2019), we employ a Bayesian approach and perform efficient Bayesian variable selection to identify important predictors for the probability of species presence as well as the probabilities of observation error at either stage. C_LIO_LIWe demonstrate the RShiny app using a data set on great crested newts collected by Natural England in 2018 and we identify water quality, pond area, fish presence, macrophyte cover, frequency of drying as important predictors for species presence at a site. C_LIO_LIThe state-of-the-art statistical method that we have implemented is the only one that has specifically been developed for the purposes of modelling false negatives and false positives in eDNA data. Our RShiny app is user-friendly, requires no prior knowledge of R and fits the models very efficiently. Therefore, it should be part of the tool-kit of any researcher or practitioner who is collecting or analysing eDNA data. C_LI