bioRxivBiophysics
Salt Induced Transitions in the Conformational Ensembles of Intrinsically Disordered Proteins
Abstract
Salts modulate the behavior of intrinsically disordered proteins (IDPs). In low ionic strength solutions, IDP conformations are primarily perturbed by the screening of electrostatic interactions, independent of the identity of the salt. In this regime, insight into the IDP behavior can be obtained using the theory for salt-induced transitions in charged polymers. However, in high ionic strength solutions, salt-specific interactions with the charged and uncharged residues, known as the Hofmeister effect, influence IDP behavior. There is a lack of reliable theoretical models in high salt concentration regimes to predict the salt effect on IDPs. Using a coarse-grained simulation model for the IDPs and experimentally measured water to salt solution transfer free-energies of various chemical groups, we studied the salt-specific transitions induced in the IDPs conformational ensemble. We probed the effect of three different salts, ranging from protective osmolyte to denaturant, on five IDPs belonging to various polymer classes classified based on charge content. The transitions observed in the IDP conformational ensembles are dependent on the salt used and the IDP polymer class. An important implication of these results is that a suitable salt can be identified to induce condensation of an IDP through liquid-liquid phase separation.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Salt-dependent conformational changes of intrinsically disordered proteins
S. Wohl, M. Jakubowski, W. Zheng·bioRxiv·May 20, 2021
- The Origin of the Ionic-strength Dependent Reentrant Behavior in Liquid-Liquid Phase Separation of Uncharged IDPs
Sayantan Mondal, Eugene I. Shakhnovich·bioRxiv·Mar 20, 2025
- Direct and Indirect Salt Effects on Homotypic Phase Separation
Matthew MacAinsh, Souvik Dey, Huan‐Xiang Zhou·eLifePeer-reviewed·Aug 12, 2024
- Criticality in the conformational phase transition among self-similar groups in intrinsically disordered proteins: probed by salt-bridge dynamics
Abhirup Bandyopadhyay, Sankar Basu·Biochimica et Biophysica Acta (BBA) - Proteins and ProteomicsPeer-reviewed·Jun 21, 2020
- Salt-bridge Dynamics in Intrinsically Disordered Proteins: A trade-off between electrostatic interactions and structural flexibility
Sankar Basu, Parbati Biswas·Biochimica et Biophysica Acta (BBA) - Proteins and ProteomicsPeer-reviewed·Mar 18, 2018
- Sequence-Dependent Conformational Transitions of Disordered Proteins During Condensation
J. Wang, D. Sundaravadivelu Devarajan, … J. Mittal·bioRxiv·Jan 11, 2024