bioRxivBioinformaticsPreprint
Differential Expression of Immune Related Genes in Taste Buds of Fed and Fasted Mice
SM Crosson, Seth Currlin, Oleksandr V. Moskalenko, Svitlana Yegorova, Cedrick D. DotsoniD, Sergei Zolotukhin
Abstract
To study the effects of feeding on taste receptor cell transcriptional regulation, we performed RNA-seq analysis of circumvallate taste buds isolated from mice before or after food consumption. Here we report and compare the taste bud transcriptomes obtained from food-deprived, satiated, and ad libitum fed control mice. Despite sample heterogeneity inherent to the whole taste bud transcriptome, bioinformatics analysis yielded 144 differentially expressed transcripts associated with immunity, cytoskeletal structure, and protein folding between these groups. We also profiled the transcriptome obtained from ad libitum fed control mice based on receptor related gene ontology terms, demonstrating a use of this dataset in the identification of novel TRC receptors. The data presented here suggest that transcriptional regulation of immune cytokine signaling occurs in TRCs shortly after meal consumption, though additional analysis is required to confirm this hypothesis.
- organism: mouse
- assay: bulk RNA-seq
- research focus: differential expression
- research focus: gene regulatory network inference
- research focus: database / resource
- approach: statistical model
- approach: machine learning (classical)
- Citations
- 1
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