bioRxivBiophysics
Phasor Identifier: A Cloud-based Analysis of Phasor-FLIM Data on Python Notebooks
Abstract
This study aims at creating an accessible notebook tool for the versatile analysis of phasor Fluorescence Lifetime Imaging Microscopy (FLIM) data collected from various samples (e.g. cuvette, cells, tissues) and in various input file formats. The presented strategy facilitates morphological segmentations and diverse mask imports. Results derived from three compelling case studies involving cellular metabolism, nanoscale drug encapsulation (doxorubicin), and the impact of pH and metabolic cleavage on small fluorescent drugs (irinotecan), showcase extensive analysis capabilities. The notebook-centered approach accelerates phasor-FLIM data analysis via external servers, supporting multi-scale research and avoiding the need for GPUs, RAM, and disk space.
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- FLUTE: a Python GUI for interactive phasor analysis of FLIM data
Dale Gottlieb, Bahar Asadipour, … Chiara Stringari·Biological ImagingPeer-reviewed·Jan 1, 2023
- FLIMPA: A versatile software for Fluorescence Lifetime Imaging Microscopy Phasor Analysis
Sofia Kapsiani, Nino F. Läubli, … Gabriele S. Kaminski Schierle·Analytical ChemistryPeer-reviewed·May 23, 2025
- FLIMJ: an open-source ImageJ toolkit for fluorescence lifetime image data analysis
D. W. Gao, P. R. Barber, … K. W. Eliceiri·bioRxiv·Aug 17, 2020
- FLIM Playground: An interactive, end-to-end graphical user interface for analyzing single-cell fluorescence lifetime data
Wenxuan Zhao, Kayvan Samimi, … Rupsa Datta·Cell Reports MethodsPeer-reviewed·Jun 10, 2026
- Fluorescence Lifetime Unmixing: A New Workflow for FLIM Live-Cell Imaging
Cornelia Wetzker, Marcelo Zoccoler, … Gunar Fabig·bioRxiv·Mar 5, 2025
- GSLab: Open-Source Platform for Advanced Phasor Analysis in Fluorescence Microscopy
Alexander Vallmitjana, Belén Torrado, … Mihaela Balu·BioinformaticsPeer-reviewed·Mar 29, 2025