IEEE SoutheastConNeurosciencePeer-reviewed journal article
Scaling Properties for Artificial Neural Network Models of a Small Nervous System
Quilee SimeoniD, Leandro VenâncioiD, Michael SkuherskyiD, Aran NayebiiD, Edward S. BoydeniD, Guangyu Robert YangiD
Abstract
The nematode worm C. elegans provides a unique opportunity for exploring in silico data-driven models of a whole nervous system, given its transparency and well-characterized nervous system facilitating a wealth of measurement data from wet-lab experiments. This study explores the scaling properties that may govern learning the underlying neural dynamics of this small nervous system by using artificial neural network (ANN) models. We investigate the accuracy of self-supervised next time-step neural activity prediction as a function of data and models. For data scaling, we report a monotonic log-linear reduction in mean-squared error (MSE) as a function of the amount of neural activity data. For model scaling, we find MSE to be a nonlinear function of the size of the ANN models. Furthermore, we observe that the dataset and model size scaling properties are influenced by the particular choice of model architecture but not by the precise experimental source of the C. elegans neural data. Our results fall short of producing long-horizon predictive and generative models of C. elegans whole nervous system dynamics but suggest directions to achieve those. In particular our data scaling properties extrapolate that recording more neural activity data is a fruitful near-term approach to obtaining better predictive ANN models of a small nervous system.
- organism: C. elegans
- assay: electronic health records
- research focus: benchmarking
- approach: statistical model
- Citations
- 0
- FWCI
- 0.00
- Field percentile
- 4th percentile
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Optimization of connectome weights for a neural network model generating both forward and backward locomotion in C. elegans.
Taegon Chung, Sang‐Yeol Kim·Scientific ReportsPeer-reviewed·May 21, 2026
- Hierarchical recurrent state space models reveal discrete and continuous dynamics of neural activity in C. elegans
Scott W. Linderman, Annika L. A. Nichols, … Liam Paninski·bioRxiv·Apr 29, 2019
- Learning to live with Dale's principle: ANNs with separate excitatory and inhibitory units
Jonathan H. Cornford, Damjan Kalajdzievski, … Blake A. Richards·bioRxiv·Nov 2, 2020
- Recurrent Neural Networks with Interpretable Cells Predict and Classify Worm Behaviour
Kezhi Li, Avelino Javer, … Andre E.X. Brown·bioRxiv·Nov 20, 2017
- Emergence of time persistence in an interpretable data-driven neural network model
Sébastien Wolf, Guillaume Le Goc, … Rémi Monasson·eLifePeer-reviewed·Mar 14, 2023
- Real-cyber hybrid neural network for predicting neural circuits in mouse decision-making
Yutaro Ueoka, H. Maeda, … Akihiro Funamizu·bioRxiv·Oct 15, 2024