bioRxivGenomicsPreprint
Genome assembly of the edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae)
Project Coordinator and Co-Principal Investigators, Jerome H. L. HuiiD, Ting Fung ChaniD, Leo L. Chan, Siu Gin CheungiD, Chi Chiu CheangiD, James Kar‐Hei FangiD, Juan Diego Gaitán‐EspitíaiD, Stanley C. K. LauiD, Yik‐Hei SungiD, Chris K.C. WongiD, Kevin Yuk-Lap YipiD, Yingying WeiiD, Tze Kiu Chong, Sean T.S. LawiD, Genome assembly and gene model prediction, Wenyan NongiD, Genome analysis and quality control, Sample collector and logistics, Ho Yin YipiD
Abstract
The edible jelly fungus Dacryopinax spathularia (Dacrymycetaceae) is wood-decaying and can be commonly found worldwide. It has also been used in food additives given its ability to synthesize long-chain glycolipids. In this study, we present the genome assembly of D. spathularia using a combination of PacBio HiFi reads and Omni-C data. The genome size of D. spathularia is 29.2 Mb and in high sequence contiguity and completeness, including scaffold N50 of 1.925 Mb and 92.0% BUSCO score, respectively. A total of 11,510 protein-coding genes, and 474.7 kb repeats accounting for 1.62% of the genome, were also predicted. The D. spathularia genome assembly generated in this study provides a valuable resource for understanding their ecology such as wood decaying capability, evolutionary relationships with other fungus, as well as their unique biology and applications in the food industry.
- organism: Drosophila
- assay: whole-genome sequencing
- research focus: genome assembly
- approach: experimental assay
- Citations
- 0
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