HaploSight: An alternative approach for Y chromosomal haplogroup identification
Lukkaet Laoprapaipan, Kittichai Phusawang, Peerapan Laorchairangsi, Arnond Kitnitchee, Hataitip Wachirawanitchkit, Bun Suwanparsert, Pattarapon PromnuniD
Abstract
Identification of Y chromosomal haplogroups holds significance in the study of human evolution. In this context, an alternative approach named HaploSight was introduced for identifying Y chromosomal haplogroups. This approach relied on the algorithm of matched and unmatched informative SNPs extracted from the reference phylogenetic tree, implemented in Python. HaploSight demonstrated high accuracy in identifying haplogroups and offered adequate depth in haplogroup analysis. Furthermore, it was compatible with various genotyping arrays, enabling users to work with both sequencing and SNPs dataset.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men
G. David Poznik·bioRxiv·Nov 19, 2016
- SNAPPY: Single Nucleotide Assignment of Phylogenetic Parameters on the Y chromosome
Alissa L. Severson, Jonathan Shortt, … Christopher R. Gignoux·bioRxiv·Oct 29, 2018
- YHP: Y-chromosome Haplogroup Predictor for predicting male lineages based on Y-STRs
Mengyuan Song, Yuxiang Zhou, … Yiping Hou·Forensic Science InternationalPeer-reviewed·Jun 18, 2024
- ybyra: Y-chromosome haplogroup calling using a tree-based scoring method
Thomaz Pinotti, Hugh McColl, … Lucas Czech·bioRxiv·Nov 20, 2025
- yallHap: Modern Y-chromosome haplogroup inference with probabilistic scoring and ancient DNA support
Alaina Hardie·bioRxiv·Jan 1, 2026
- A benchmarking of human Y-chromosomal haplogroup classifiers from whole-genome and whole-exome sequence data
Víctor García‐Olivares, Adrián Muñoz‐Barrera, … Carlos Flores·bioRxiv·Sep 19, 2022