henhaobio
Sign in

npj Biological Timing and SleepNeurosciencePeer-reviewed journal article

CCorGsDB: A Database for Clock Correlated Genes in the Mouse and Human Central Nervous Systems

José Luiz Araújo SantosiD, Vinícius Tenório Braga Cavalcante Pinto, Thales Eduardo da Silva Santos, Daniel Gomes CoimbraiD, Tiago Gomes de AndradeiD

PDFDOIPreprint

Abstract

We introduce CCorGsDB, a web-based tool that integrates co-expression networks filtered by circadian biomarkers to identify candidate clock-regulated genes in spatially defined regions of the mouse and human central nervous systems. Built using Weighted Gene Co-expression Network Analysis (WGCNA), CCorGsDB includes [~]16,000 genes for mouse and [~]37,000 for human, highlighting genes highly correlated with canonical clock markers. The tool incorporates disease associations and drug target information for compounds with short half-lives acting on the CNS, supporting chronopharmacological research. Users can explore region-specific data through an interactive interface offering query, visualization, and download options. CCorGsDB is freely accessible at https://famed.ufal.br/ccorgs.

Citations
1
FWCI
3.31
Field percentile
top 16%

Reproducibility ledger

Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.

Sign in to file a reproducibility report.

Similarity Map
SelectedSame fieldCross-field
THISZacharias '24Sharma '21Li '22Raina '21Shilts '17Littleton '20
59% semantic matchNeuroscience
Amanda M Zacharias, Ciara D O'Connor, Danai Georgia Topouza+5 more·bioRxiv·Sep 9, 2024· 1 citations