bioRxivBioengineeringPreprint
Identifying and engineering the molecular origins of lignin color for predictive staining of plant tissues.
André GündeliD, Delphine MénardiD, Marije NillesseniD, Antoine ChampagneiD, Λεωνίδας ΜάτσακαςiD, Mika Henrikki SipponeniD, Scott E. SattleriD, Shinya KajitaiD, Edouard PesquetiD
Abstract
Lignins in plant biomass are carbon-negative aromatic biopolymers which hold tremendous potential as multipurpose resources for sustainable bioeconomy, limited only by their chemical heterogeneity. Plant lignified tissues, such as sapwood and seed coats, vary in colors within and between species, indicating that specific lignin topochemistries determine the different colors. Yet, the responsible lignin chromogen(s) are unknown. We developed chemical imaging using UV-Vis microspectroscopy to link lignin color to topochemistry in isolates and plant samples. Using synthetic and technical lignins, we identified the different stable chromogens as homomeric lignin substructures varying in size, unit chemistry and interunit linkages. We controlled the accumulation of specific lignin chromogens using genetic engineering to similarly stain lignified tissues from different plant species. We established plant tissue engineering to cast plant tissues with pre-determined color by adjusting lignin topochemistries. We proved that biotechnological manipulation of the identified lignin chromogens predictably and stably stains lignified plant tissues.
- organism: plant (other)
- assay: DNA methylation
- assay: proteomics
- research focus: cell type annotation
- research focus: protein folding & dynamics
- approach: experimental assay
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Fluorescence lifetime imaging as an in situ and label-free readout for the chemical composition of lignin
S. Escamez, C. Terryn, … G. Paes·bioRxiv·Aug 26, 2021
- Engineering auronidin production in Marchantia polymorpha enables a new class of plant-derived textile pigments
Aurore Lormet, Jim P. Haseloff, Facundo Romani·ACS Synthetic BiologyPeer-reviewed·Jul 18, 2026
- Plant biomechanics and resilience to environmental changes are controlled by specific lignin chemistries in each vascular cell type and morphotype
D. Menard, L. Blaschek, … E. Pesquet·bioRxiv·Jun 12, 2021
- Schengen-pathway controls spatially separated and chemically distinct lignin deposition in the endodermis.
G. Reyt, P. Ramakrishna, … D. E. Salt·bioRxiv·Oct 7, 2020
- Mapping lignification dynamics with a combination of chemistry, data segmentation and ratiometric analysis
- Precursor-Dependent Routing of Aromatic Amino Acids Determines Lignin Structure in Grasses by Sensitivity-Enhanced Solid-State NMR
Priya Sahu, Debkumar Debnath, … Tuo Wang·Journal of the American Chemical SocietyPeer-reviewed·Mar 26, 2026