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G3 Genes Genomes GeneticsBioinformaticsPeer-reviewed journal article

A faster and more accurate algorithm for calculating population genetics statistics requiring sums of Stirling numbers of the first kind

Swaine Lin CheniD, Nico Μ. ΤemmeiD

PDFDOIPreprint

Abstract

Stirling numbers of the first kind are used in the derivation of several population genetics statistics, which in turn are useful for testing evolutionary hypotheses directly from DNA sequences. Here, we explore the cumulative distribution function of these Stirling numbers, which enables a single direct estimate of the sum, using representations in terms of the incomplete beta function. This estimator enables an improved method for calculating an asymptotic estimate for one useful statistic, Fus Fs. By reducing the calculation from a sum of terms involving Stirling numbers to a single estimate, we simultaneously improve accuracy and dramatically increase speed.

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