Can we predict sleep health based on brain features? A large-scale machine learning study using UK Biobank
Federico RaimondoiD, Hanwen BiiD, Vera KomeyeriD, Jan KasperiD, Sabrina A. PrimusiD, Felix HoffstaedteriD, Synchon MandaliD, Laura K. WaiteiD, Juliane WinkelmanniD, Konrad OexleiD, Simon Bodo EickhoffiD, Masoud TahmasianiD, Kaustubh R. PatiliD
Abstract
BackgroundsSeveral correlational or group comparison evidence highlighted robust associations between sleep health and macro-scale brain organization. However, inter-individual variability is critical in such interplay. Therefore, in this study, we aimed to investigate the role of brain imaging features in predicting diverse sleep health-related characteristics at the individual subject level using the Machine Learning (ML) approach. MethodsA sample of 28,088 participants from the UK Biobank was employed to calculate 4677 structural and functional neuroimaging markers. Then, we employed them to predict self-reported insomnia symptoms, sleep duration, easiness of getting up in the morning, chronotype, daily nap, daytime sleepiness, and snoring. To assess the predictability of brain features, we built seven different linear and nonlinear ML models for each sleep health-related characteristic. ResultsWe performed extensive ML analyses that involved more than 19 years of compute time. We observed relatively low performance in predicting all sleep health-related characteristics from brain images (e.g., balanced accuracy ranging between 0.50-0.59). Across all models, the best performance achieved was 0.59, using a linear ML model to predict the ease of getting up in the morning. In fact, a similar performance was achieved with models trained solely on age and sex, indicating that these demographic factors might be the ones driving the predictions. ConclusionsThe low capability of multimodal neuroimaging markers in predicting sleep health-related characteristics, even under extensive ML optimization in a large population sample, suggests a complex relationship between sleep health and brain organization.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 2
- FWCI
- 7.84
- Field percentile
- top 7%
- Organism
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- On Monitoring Brain Health from the Depths of Sleep: Feature Engineering and Machine Learning Insights for Digital Biomarker Development
Brice V. McConnell, Yaning Liu, … Vitaly O. Kheyfets·bioRxiv·Feb 27, 2024
- Neuropredictome: a data-driven predictome for cognitive, psychiatric, medical, and lifestyle factors on the brain
Syed Fahad Sultan, Lilianne Rivka Mujica-Parodi, Steven Skiena·IEEE International Conference on Bioinformatics and Biomedicine (BIBM)Peer-reviewed·Dec 9, 2021
- A novel neuroelectrophysiological age index implicates brain health and sleep disorders
Soonhyun Yook, Hea Ree Park, … Hosung Kim·bioRxiv·Jan 24, 2022
- Population modeling with machine learning can enhance measures of mental health
Kamalaker Dadi, Gael P. Varoquaux, … Denis Alexander Engemann·GigaSciencePeer-reviewed·Oct 1, 2021
- Machine learning approaches to identify sleep genes
Yin Yeng Lee, Mehari Endale, … John B. Hogenesch·SLEEPPeer-reviewed·Dec 3, 2022
- Statistical machine learning of sleep and physical activity phenotypes from sensor data in 96,220 UK Biobank participants
Matthew Willetts, Sven Hollowell, … Aiden Doherty·Scientific ReportsPeer-reviewed·May 15, 2018