bioRxivBioinformaticsPreprint
Phase-Based Frequency Tracking and Analysis of Vocalisations in the Genus Saxicola
Abstract
Acoustic analysis provides valuable tools for studying bird vocalisations, but quantitative characterisation of call structure remains challenging when frequency and amplitude vary jointly over time. We present a phase-based frequency tracking method that represents amplitude as a function of instantaneous frequency and use it to characterise alarm calls in the genus Saxicola. The method enables the extraction of acoustic features describing the frequency trajectory and temporal structure of individual calls. We apply the method to a dataset of 801 calls from 49 recordings representing 15 species, and use principal component analysis (PCA) and robust PCA to investigate patterns of acoustic variation across species, recordings and geographic regions. The results demonstrate the feasibility of the approach and reveal structured patterns of acoustic similarity and variation among the calls analysed. Robust PCA concentrates the variance of the low-rank representation into fewer principal components than conventional PCA applied to the original feature matrix, providing a complementary representation of the dominant acoustic structure. The observed patterns illustrate the potential of quantitative acoustic characterisation for comparative studies of vocal variation. However, uneven species representation and uncertainty in individual identity and taxonomic labels limit the biological conclusions that can be drawn from the present dataset. The method provides a foundation for further acoustic research, in which broader sampling and integration with independent genetic and morphological evidence could help investigate variation within and among species.
- Citations
- 0
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A taxonomy based on acoustic features of some Iranian cicadas and calling song description of Chloropsalta smaragdula Haupt, 1920 (Hem: Cicadidae) from Isfahan, Iran
M. Mehdipour, K. Reide, … A. Mohammadi-Mobarakeh·bioRxiv·Jan 28, 2024
- Same data, different results? Machine learning approaches in bioacoustics
Kaja Wierucka, Derek Murphy, … Judith Maria Burkart·Methods in Ecology and EvolutionPeer-reviewed·Jul 9, 2025
- VOCAL SIMILARITY AND DIFFERENCES IN FOUR SPECIES OF THE GENUS ANTHUS: ACOUSTIC FEATURE ANALYSIS OF SOME COMMON CALLS
M. Dragonetti·bioRxiv·Sep 25, 2022
- Vocal distinctiveness in young Eurasian Scops Owls (Otus scops)
F. Grieco·bioRxiv·Sep 17, 2023
- Spatial variation in black-headed night monkey (Aotus nigriceps) vocalizations
W. D. Helenbrook, N. A. Linck, … J. A. Saurez·bioRxiv·Jul 8, 2019
- Quantifying the vocal repertoire of adult common terns (Sterna hirundo )
Daniel S. Zogby, Valerie M. Eddington, … Laura N. Kloepper·bioRxiv·May 22, 2026