Pinpointing protein structures over broad temperature range using hydrophobic protection
Abstract
Protein interactions are dynamic processes influenced by chemical and physical variables. While variable temperatures play an important role in understanding biological processes, their use in protein crystallography has been limited due to the loss of diffraction power. Here, we report the selection of a cryo-protectant that enables X-ray diffraction data collection across a continuum of temperatures, from cryogenic to room temperature. Although several hydrophobic materials effectively preserved samples at 100 K, only a few compounds allowed data collection at 300 K. We identified a hydrophobic grease suitable for both home-source and synchrotron applications, supporting ultrafast and slow diffraction, with exposure times as long as 60 seconds per image at atomic resolution. Data collected between 100 K and 300 K showed no significant effect of exposure time (ranging from 70 msec to 1 second) but revealed an exponential temperature dependence on the overall B-factor. These findings highlight the importance of hydrophobic grease in protecting against environmental variables, enabling optimized data collection across an ultra-wide temperature range. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=108 SRC="FIGDIR/small/662548v1_ufig1.gif" ALT="Figure 1"> View larger version (21K): org.highwire.dtl.DTLVardef@102a42eorg.highwire.dtl.DTLVardef@68facaorg.highwire.dtl.DTLVardef@2905d5org.highwire.dtl.DTLVardef@13e219b_HPS_FORMAT_FIGEXP M_FIG C_FIG
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 0
- Assay
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A Robust Method for Collecting X-ray Diffraction Data from Protein Crystals across Physiological Temperatures
T. Doukov, D. Herschlag, F. Yabukarski·bioRxiv·Mar 17, 2020
- Linking B-factor and temperature-induced conformational transition
F. d. S. Ribeiro, L. M. T. R. Lima·bioRxiv·Mar 12, 2023
- An investigation on the feasibility of shipping protein crystals in plates for room temperature in situ data collection
Christopher S. Campomizzi, M. Elizabeth Snell, … Sarah E. J. Bowman·bioRxiv·Jun 12, 2025
- Damaged goods? Evaluating the impact of X-ray damage on conformational heterogeneity in room temperature and cryo-cooled protein crystals
F. Yabukarski, T. Doukov, … D. Herschlag·bioRxiv·Jun 27, 2021
- JINXED: Just in time crystallization for easy structure determination of biological macromolecules
A. Henkel, M. Galchenkova, … D. Oberthuer·bioRxiv·Oct 26, 2022
- Depletion of the protein hydration shell with increasing temperature observed by small-angle X-ray scattering and molecular simulations
Johanna-Barbara Linse, Hyun Sun Cho, … Jochen S. Hub·Journal of the American Chemical SocietyPeer-reviewed·Dec 11, 2025