bioRxivBioinformaticsPreprint
A Systematic Approach for Explaining Time and Frequency Features Extracted by CNNs from Raw EEG Data
Abstract
In recent years, the use of convolutional neural networks (CNNs) for raw electroencephalography (EEG) analysis has grown increasingly common. However, relative to earlier machine learning and deep learning methods with manually extracted features, CNNs for raw EEG analysis present unique problems for explainability. As such, a growing group of methods have been developed that provide insight into the spectral features learned by CNNs. However, spectral power is not the only important form of information within EEG, and the capacity to understand the roles of specific multispectral waveforms identified by CNNs could be very helpful. In this study, we present a novel model visualization-based approach that adapts the traditional CNN architecture to increase interpretability and combines that inherent interpretability with a systematic evaluation of the model via a series of novel explainability methods. Our approach evaluates the importance of spectrally distinct first-layer clusters of filters before examining the contributions of identified waveforms and spectra to cluster importance. We evaluate our approach within the context of automated sleep stage classification and find that, for the most part, our explainability results are highly consistent with clinical guidelines. Our approach is the first to systematically evaluate both waveform and spectral feature importance in CNNs trained on EEG data.
- Citations
- 4
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- A Model Visualization-based Approach for Insight into Waveforms and Spectra Learned by CNNs
Charles A. Ellis, Robyn L. Miller, Vince D. Calhoun·Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)Peer-reviewed·Jul 11, 2022
- A Novel Local Explainability Approach for Spectral Insight into Raw EEG-Based Deep Learning Classifiers
Charles A. Ellis, Robyn L. Miller, Vince D. Calhoun·IEEE International Conference on Bioinformatics and Bioengineering (BIBE)Peer-reviewed·Oct 25, 2021
- A Gradient-based Spectral Explainability Method for EEG Deep Learning Classifiers
Charles A. Ellis, Mohammad S.E. Sendi, … Vince D. Calhoun·bioRxiv·Jul 14, 2021
- A Framework for Systematically Evaluating the Representations Learned by A Deep Learning Classifier from Raw Multi-Channel Electroencephalogram Data
Charles A. Ellis, Abhinav Sattiraju, … Vince D. Calhoun·bioRxiv·Mar 20, 2023
- Explainable Sleep Stage Classification with Multimodal Electrophysiology Time-series
Charles A. Ellis, Rongen Zhang, … May Dongmei Wang·Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)Peer-reviewed·Nov 1, 2021
- A Novel Activation Maximization-based Approach for Insight into Electrophysiology Classifiers
Charles A. Ellis, Mohammad S.E. Sendi, … Vince D. Calhoun·IEEE International Conference on Bioinformatics and Biomedicine (BIBM)Peer-reviewed·Dec 9, 2021