An efficient analytical reduction of detailed nonlinear neuron models
Oren AmsalemiD, Guy EyaliD, Noa RogozinskiiD, Michael GevaertiD, Pramod KumbhariD, Felix SchürmanniD, Idan SegeviD
Abstract
Detailed conductance-based nonlinear neuron models consisting of thousands of synapses are key for understanding of the computational properties of single neurons and large neuronal networks, and for interpreting experimental results. Simulations of these models are computationally expensive, considerably curtailing their utility. Neuron_Reduce is a new analytical approach to reduce the morphological complexity and computational time of nonlinear neuron models. Synapses and active membrane channels are mapped to the reduced model preserving their transfer impedance to the soma; synapses with identical transfer impedance are merged into one NEURON process still retaining their individual activation times. Neuron_Reduce accelerates the simulations by 40-250 folds for a variety of cell types and realistic number (10,000-100,000) of synapses while closely replicating voltage dynamics and specific dendritic computations. The reduced neuron-models will enable realistic simulations of neural networks at unprecedented scale, including networks emerging from micro-connectomics efforts and biologically-inspired \"deep networks\". Neuron_Reduce is publicly available and is straightforward to implement.
02 /Specification & Classification
Click any tag to browse matching papers- Citations
- 58
- FWCI
- 5.24
- Field percentile
- top 3%
- Research Focus
- Approach
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Data-driven reduction of dendritic morphologies with preserved dendro-somatic responses
Willem A. M. Wybo, Jakob Jordan, … Walter Senn·eLifePeer-reviewed·Jan 25, 2021
- Ultrafast Simulation of Large-Scale Neocortical Microcircuitry with Biophysically Realistic Neurons
Viktor Janos Oláh, Nigel P. Pedersen, Matthew JM Rowan·eLifePeer-reviewed·Oct 24, 2022
- Reduced Dimension, Biophysical Neuron Models Constructed From Observed Data
R. E. Clark, L. Fuller, … H. Abarbanel·bioRxiv·Dec 3, 2021
- Scalability of large neural network simulations via activity tracking with time asynchrony and procedural connectivity
Cyrille Mascart, Gilles Scarella, … Alexandre Muzy·Neural ComputationPeer-reviewed·Jul 27, 2022
- Markov Chain Abstractions of Electrochemical Reaction-Diffusion in Synaptic Transmission for Neuromorphic Computing
Margot Wagner, Thomas M. Bartol, … Gert Cauwenberghs·Frontiers in NeurosciencePeer-reviewed·Nov 29, 2021
- Preserving spiking and EEG in detailed models of human cortical microcircuits with morphological reductions
Alexandre Guet-McCreight, Etay Hay·bioRxiv·Sep 24, 2026