bioRxivBioinformaticsPreprint
A generative foundation model for antibody sequence understanding
Justin BartoniD, Aretas GaspariunasiD, David YadiniD, Jorge DiasiD, Francesca L. NiceiD, Danielle MinnsiD, Olivia SnuddeniD, Chelsea PovalliD, Sara ValleiD, Harry Dobson, James H. R. FarmeryiD, Jinwoo LeemiD, Jacob D. GalsoniD
Abstract
Here we introduce FAbCon, a generative antibody-specific language model comprising 2.4 billion parameters. A commonly accepted wisdom in developing large language models is that increasing model scale will translate to higher performance on downstream tasks. Starting from a 144-million parameter setup, we show that progressively larger models achieve greater accuracy in predicting antigen binding and can also be used to design new antibodies with good predicted developability potential. FAbCon is available on huggingface.co/alchemab.
- assay: protein sequence
- research focus: sequence-to-function modeling
- approach: deep learning
- approach: large language model
- Citations
- 11
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