bioRxivPhysiology
Topological data analysis of vascular disease: A theoreticalframework
Abstract
Vascular disease is a leading cause of death world wide and therefore the treatment thereof is critical. Understanding and classifying the types and levels of stenosis can lead to more accurate and better treatment of vascular disease. Some clinical techniques to measure stenosis from real patient data are invasive or of low accuracy.\n\nIn this paper, we propose a new methodology, which can serve as a supplementary way of diagnosis to existing methods, to measure the degree of vascular disease using topological data analysis. We first proposed the critical failure value, which is an application of the 1-dimensional homology group to stenotic vessels as a generalization of the percent stenosis. We demonstrated that one can take important geometric data including size information from the persistent homology of a topological space. We conjecture that we may use persistent homology as a general tool to measure stenosis levels for many different types of stenotic vessels.\n\nWe also proposed the spherical projection method, which is meant to allow for future classification of different types and levels of stenosis. We showed empirically using the spectral approximation of different vasculatures that this projection could provide a new medical index that measures the degree of vascular disease. Such a new index is obtained by calculating the persistence of the 2-dimensional homology of flows. We showed that the spherical projection method can differentiate between different cases of flows and reveal hidden patterns about the underlying blood flow characteristics, that is not apparent in the raw data. We showed that persistent homology can be used in conjunction with this technique to classify levels of stenosis.\n\nThe main interest of this paper is to focus on the theoretical development of the framework for the proposed method using a simple set of vascular data.
- organism: human
- assay: imaging
- research focus: cell type annotation
- research focus: clustering
- approach: deep learning
- approach: statistical model
Reproducibility ledger
Nobody has reported trying to reproduce this paper yet. Did you replicate an experiment or run the code? Your report saves the next lab a week.
Sign in to file a reproducibility report.
Related papers
- Preprocessing of general stenotic vascular flow data for topological data analysis
C. Bresten, J. Kweon, … J.-H. Jung·bioRxiv·Jan 7, 2021
- Topological Analysis of Vascular Networks: A Proof-of-Concept Study in Cerebral Angiography
Arturo Tozzi·bioRxiv·Feb 10, 2025
- A Study of Coronary Artery Disease in the Left Circumflex Artery via Artificial Vessel Restoration
F. Liu, A. Paulraj·bioRxiv·May 27, 2020
- Graph-Based Classification of Penetrating Cortical Arteries and Veins in Whole-Mouse Vasculature Datasets
Sofia Farina, Letizia Greco, … Franca Schmid·bioRxiv·Oct 21, 2026
- Comparing the Effect of Helical-centerline Stent Placement on Blood Flow Velocity with a Straight Stent
- Distance preserving dimension reduction withlocal-topology based scaling for improvedclassification of Biomedical data-sets.
Karaj Khosla, Indra Prakash Jha, Vibhor Kumar·bioRxiv·Dec 27, 2019