Journal of Computational NeuroscienceNeurosciencePeer-reviewed journal article
Convolutional neural network models of V1 responses to complex patterns
Yimeng ZhangiD, Tai Sing LeeiD, Ming LiiD, Fang LiuiD, Shiming TangiD
Abstract
In this study, we evaluated the convolutional neural network (CNN) method for modeling V1 neurons of awake macaque monkeys in response to a large set of complex pattern stimuli. CNN models outperformed all the other baseline models, such as Gabor-based standard models for V1 cells and various variants of generalized linear models. We then systematically dissected different components of the CNN and found two key factors that made CNNs outperform other models: thresholding nonlinearity and convolution. In addition, we fitted our data using a pre-trained deep CNN via transfer learning. The deep CNNs higher layers, which encode more complex patterns, outperformed lower ones, and this result was consistent with our earlier work on the complexity of V1 neural code. Our study systematically evaluates the relative merits of different CNN components in the context of V1 neuron modeling.
- organism: mouse
- assay: electronic health records
- research focus: benchmarking
- research focus: cell type annotation
- approach: deep learning
- approach: statistical model
- Citations
- 47
- FWCI
- 3.57
- Field percentile
- top 7%
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