Author

A. B. Oliveira Junior

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 4

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Approach:deep learning· 3 Research Focus:protein folding & dynamics· 2 Assay:protein structure· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:Hi-C· 1

Frequent Co-Authors

J. N. Onuchic· 3 shared V. B. P. Leite· 3 shared M. N. Sanches· 2 shared B. S. Ruben· 1 shared F. V. Paulovich· 1 shared I. B. S. Martins· 1 shared J. B. de Camargo· 1 shared K. Knapp· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersBiophysics

J. N. Onuchic

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Author profile →

4 papers

Recent·Most cited

ELViM: Understanding Molecular Energy Landscape

R. G. Viegas, I. B. S. Martins, M. N. Sanches, A. B. Oliveira Junior, J. B. de Camargo, F. V. Paulovich, V. B. P. Leite

ELViM is a multidimensional reduction technique for analyzing MD simulation data, demonstrating its ability to visualize complex biomolecular conformational landscapes.

bioRxiv · Jan 4, 2024Biophysics

Structural Reorganization and Relaxation Dynamics of Axially Stressed Chromosomes

B. S. Ruben, S. Brahmachari, V. G. Contessoto, R. R. Cheng, A. B. Oliveira Junior, M. Di Pierro, J. N. Onuchic

This study uses a coarse-grained polymer model to simulate mitotic chromosome mechanics, finding they are ten times stiffer than interphase chromosomes and exhibit viscoelastic behavior.

bioRxiv · Sep 3, 2022Biophysics

Examining the Ensembles of Amyloid-β Monomer Variants and their Propensities to Form Fibers Using an Energy Landscape Visualization Method

M. N. Sanches, K. Knapp, A. B. Oliveira Junior, P. G. Wolynes, J. N. Onuchic, V. B. P. LEITE

This study uses ELViM to analyze Aβ40 and Aβ42 monomers and their mutations, showing how ELViM distinguishes fiber-forming from non-fiber-forming variants.

bioRxiv · Oct 28, 2021Biophysics

Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms

A. B. Oliveira Junior, X. Lin, P. Kulkarni, J. N. Onuchic, S. Roy, V. B. P. Leite

This paper introduces ELViM, a reaction coordinate-free method to analyze energy landscapes of IDPs, revealing conformational differences between phosphoforms of PAGE4.

bioRxiv · Jan 28, 2021Biophysics