Author

A. C. Howe

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 4 Ecology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 5 Approach:experimental assay· 4 Research Focus:cell type annotation· 3 Research Focus:differential expression· 3 Research Focus:clustering· 2 Research Focus:database / resource· 2 Research Focus:ecology & biodiversity· 2 Approach:statistical model· 2

Frequent Co-Authors

A. Shade· 3 shared J. Choi· 3 shared J. Yang· 2 shared T. K. Dunivin· 2 shared A. P. d. Oliveira· 1 shared B. J. R. Alves· 1 shared B. M. F. Borges· 1 shared E. d. C. Jesus· 1 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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3 shared papersMicrobiology

A. Shade

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Bacteria in honeybee crops are decoupled from those in floral nectar and bee mouths

M. L. Warren, K. Tsuji, L. E. Decker, M. Kishi, J. Yang, A. C. Howe, T. Fukami

This study shows that bacteria in honeybee crops are distinct from those in nectar and mouths, challenging the assumption that crops are transient and environmentally influenced.

bioRxiv · Mar 1, 2024Ecology

Litter Matters: The Importance of Decomposition Products for Soil Bacterial Diversity and abundance of key groups of the N cycle in Tropical Areas

P. P. Diniz, B. M. F. Borges, A. P. d. Oliveira, M. R. Coelho, O. O. d. S. Aragao, T. G. Ribeiro, F. I. Rocha, B. J. R. Alves, M. R. R. Coelho, E. S. Dias, J. R. R. Cole, A. C. Howe, T. S. Mui, E. d. C. Jesus

This study examines how organic soil layers influence bacterial diversity and nitrogen cycle group abundance in tropical forests and pastures, finding higher diversity in transitional organic layers.

bioRxiv · Mar 3, 2023 · PreprintMicrobiology

Response of total (DNA) and metabolically active (RNA) microbial communities in Miscanthus x giganteus cultivated soil to different nitrogen fertilization rates

J. Yang, J. Lee, J. Choi, L. Ma, E. Heaton, A. C. Howe

The paper compares DNA and RNA microbial communities in Miscanthus x giganteus soil under different nitrogen fertilization rates, finding RNA-based communities better reflect nitrogen-cycling taxa.

bioRxiv · Oct 28, 2021Microbiology

Life on the leaf: Seasonal activities of the phyllosphere microbiome of perennial crops

A. C. Howe, N. Stopnisek, S. K. Dooley, F. Yang, K. L. Grady, A. Shade

This study analyzes the seasonal activities of the phyllosphere microbiome in switchgrass and miscanthus using metagenome and metatranscriptome sequencing to identify key microbial functions and their responses to environmental cues.

bioRxiv · Apr 20, 2021 · PreprintMicrobiology

Strategies for building computing skills to support microbiome analysis: a five-year perspective from the EDAMAME workshop

A. Shade, T. K. Dunivin, J. Choi, T. Teal, A. C. Howe

The paper describes an educational workshop series aimed at teaching microbiologists computing skills for microbiome analysis over five years.

bioRxiv · May 9, 2019Scientific Communication & Education

RefSoil+: A reference for antimicrobial resistance genes on soil plasmids

T. K. Dunivin, J. Choi, A. C. Howe, A. Shade

RefSoil+ is a database of soil plasmids that reveals their size, diversity, and antibiotic resistance gene content, suggesting limited potential for plasmid-mediated transfer of resistance genes to clinical strains.

bioRxiv · Oct 4, 2018 · PreprintMicrobiology