Author

A. Timoneda

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Bioengineering· 1

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Research Focus:phylogenetics / evolution· 3 Organism:plant (other)· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:comparative / phylogenetic analysis· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

S. A. Smith· 3 shared S. F. Brockington· 3 shared Y. Yang· 3 shared J. F. Walker· 2 shared J. Mikenas· 2 shared M. J. Moore· 2 shared A. Amirvaresi· 1 shared B. Liang· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersEvolutionary Biology

S. A. Smith

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Author profile →

4 papers

Recent·Most cited

Black Soldier Fly Bioconversion to Cultivated Meat Media Components Using Blue Catfish Gut Microbiome

A. Timoneda, A. Amirvaresi, R. Ovissipour

This paper develops low-cost media for cell-cultivated seafood using gut microbial fermentation of black soldier fly larvae with blue catfish gut microbiome, showing varying effects on cell proliferation.

bioRxiv · Jan 20, 2024Bioengineering

Disentangling Sources of Gene Tree Discordance in Phylogenomic Datasets: Testing Ancient Hybridizations in Amaranthaceae s.l.

D. F. Morales-Briones, G. Kadereit, D. T. Tefarikis, M. Moore, S. A. Smith, S. F. Brockington, A. Timoneda, W. C. Yim, J. C. Cushman, Y. Yang

The paper investigates gene tree discordance in Amaranthaceae s.l. using multiple methods, finding that ancient hybridizations and rapid lineage diversification may contribute to the discordance.

bioRxiv · Jul 14, 2020Evolutionary Biology

Evolution of Portulacineae marked by gene tree conflict and gene family expansion associated with adaptation to harsh environments

N. Wang, Y. Yang, M. J. Moore, S. F. Brockington, J. F. Walker, J. W. Brown, B. Liang, T. Feng, C. Edwards, J. Mikenas, J. Olivieri, V. Hutchison, A. Timoneda, T. Stoughton, R. Puente, , S. A. Smith

This study reconstructs the phylogeny of Portulacineae and examines molecular evolution correlates with adaptation to harsh environments, identifying gene duplications and expansions linked to stress responses.

bioRxiv · Aug 13, 2018Evolutionary Biology

Widespread paleopolyploidy, gene tree conflict, and recalcitrant relationships among the carnivorous Caryophyllales

J. F. Walker, Y. Yang, M. J. Moore, J. Mikenas, A. Timoneda, S. F. Brockington, S. A. Smith

The paper uses phylogenomic data to analyze relationships among carnivorous Caryophyllales, finding gene tree conflict, paleopolyploidy events, and unresolved relationships.

bioRxiv · Mar 10, 2017Evolutionary Biology