Author

Aamuktha Kottapalli

University of Wisconsin–Madison

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Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:matrix factorization· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Lindsay KalaniD· 1 shared Rauf SalamzadeiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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2 top collaborators · 1 mutual co-author link

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1 shared paperBioinformatics

Lindsay KalanORCID

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1 paper

Recent·Most cited

skDER & CiDDER: two scalable approaches for microbial genome dereplication

Rauf Salamzade, Aamuktha Kottapalli, Lindsay Kalan

The paper introduces two tools, skDER and CiDDER, for microbial genome dereplication to select representative genomes for comparative genomic studies.

Microbial Genomics · Jul 10, 2025Peer-reviewedBioinformatics