Benchmarking Transposable Element Annotation Methods for Creation of a Streamlined, Comprehensive Pipeline
Shujun Ou, Weija Su, Yi Liao, Kapeel M. Chougule, Jireh R. A. Agda, Adam J. Hellinga, Carlos Santiago Blanco Lugo, Tyler A. Elliott, Doreen Ware, Thomas Peterson, Ning Jiang, Candice N. Hirsch, Matthew B. Hufford
The paper benchmarks TE annotation methods and develops a pipeline called EDTA to create a comprehensive, condensed TE library for both intact and fragmented elements in rice genomes.
Genome biology · Dec 16, 2019Peer-reviewedGenomics