Author

Ning Jiang

Michigan State UniversityORCID 0000-0002-2776-6669Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Ning Jiang2 papers · Beijing Institute of Technology

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:plant (other)· 3 Research Focus:database / resource· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

Shujun OuiD· 3 shared Adam J. Hellinga· 1 shared Candice N. HirschiD· 1 shared Carlos Santiago Blanco Lugo· 1 shared Doreen WareiD· 1 shared Jireh R. A. AgdaiD· 1 shared Kapeel M. ChouguleiD· 1 shared Matthew B. HuffordiD· 1 shared

Activity by Year

2017-2019 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Shujun OuORCID

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3 papers

Recent·Most cited

Benchmarking Transposable Element Annotation Methods for Creation of a Streamlined, Comprehensive Pipeline

Shujun Ou, Weija Su, Yi Liao, Kapeel M. Chougule, Jireh R. A. Agda, Adam J. Hellinga, Carlos Santiago Blanco Lugo, Tyler A. Elliott, Doreen Ware, Thomas Peterson, Ning Jiang, Candice N. Hirsch, Matthew B. Hufford

The paper benchmarks TE annotation methods and develops a pipeline called EDTA to create a comprehensive, condensed TE library for both intact and fragmented elements in rice genomes.

Genome biology · Dec 16, 2019Peer-reviewedGenomics

LTR_FINDER_parallel: parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons

Shujun Ou, Ning Jiang

LTR_FINDER_parallel accelerates LTR retrotransposon identification in plant genomes by parallelizing LTR_FINDER, reducing processing time from 1.16 years to 72 minutes for a 14.5 Gb wheat genome.

Mobile DNA · Dec 1, 2019Peer-reviewedGenomics

LTR_retriever: A Highly Accurate And Sensitive Program For Identification Of LTR Retrotransposons

Shujun Ou, Ning Jiang

LTR_retriever identifies LTR retrotransposons with high sensitivity and specificity, including non-canonical variants, across plant genomes.

PLANT PHYSIOLOGY · Dec 12, 2017Peer-reviewedGenomics