Author

Adam R. Stabell

University of California, Irvine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Systems Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Approach:machine learning (classical)· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Qing Hua NieiD· 3 shared Scott X. AtwoodiD· 3 shared Shuxiong WangiD· 2 shared Adam L. MacLeaniD· 1 shared Axel A. AlmetiD· 1 shared Bao T. That· 1 shared Christian Fernando Guerrero‐JuareziD· 1 shared Claudia A. BenaventeiD· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersSystems Biology

Qing Hua NieORCID

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Author profile →

3 papers

Recent·Most cited

Single cell transcriptomics of human skin equivalent organoids

Adam R. Stabell, Grace E. Lee, Yunlong Y. Jia, Kirsten N. Wong, Shuxiong Wang, Ling Ji, Sandrine Nguyen, George L. Sen, Qing Hua Nie, Scott X. Atwood

This study uses single-cell RNA sequencing to compare human skin equivalent organoids with in vivo epidermis, identifying both similarities and unique features in their cellular states and differentiation trajectories.

Cell Reports · May 1, 2023Peer-reviewedSystems Biology

Screening cell-cell communication in spatial transcriptomics via collective optimal transport

Zixuan Cang, Yanxiang Zhao, Axel A. Almet, Adam R. Stabell, Raúl Ramos, Maksim V. Plikus, Scott X. Atwood, Qing Hua Nie

This paper introduces COMMOT, a method for inferring cell-cell communication in spatial transcriptomics, and demonstrates its effectiveness across multiple datasets and technologies.

Nature Methods · Jan 23, 2023Peer-reviewedBioinformatics

Single cell transcriptomics of human epidermis reveals basal stem cell transition states

Shuxiong Wang, Michael L. Drummond, Christian Fernando Guerrero‐Juarez, Eric Tarapore, Adam L. MacLean, Adam R. Stabell, Stephanie Wu, Guadalupe Gutierrez, Bao T. That, Claudia A. Benavente, Qing Hua Nie, Scott X. Atwood

The paper uses single-cell RNA sequencing to identify spatially distinct basal stem cell populations in human epidermis and shows their role in maintaining epidermal homeostasis through signaling and differentiation.

Nature Communications · Aug 25, 2020Peer-reviewedSystems Biology