Author

Zixuan Cang

University of California, IrvineORCID 0000-0002-9951-5586Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:optimal transport· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Qing Hua NieiD· 3 shared Adam L. MacLeaniD· 1 shared Adam R. Stabell· 1 shared Anna GrosbergiD· 1 shared Axel A. AlmetiD· 1 shared Daniel HaenseliD· 1 shared Enrico GrattoniD· 1 shared Halida P. WidyastutiiD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersGenomics

Qing Hua NieORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

GenomicsCellsPeer-reviewedSep 3, 2024

LMNA-Related Dilated Cardiomyopathy: Single-Cell Transcriptomics during Patient-derived iPSC Differentiation Support Cell type and Lineage-specific Dysregulation of Gene Expression and Development for Cardiomyocytes and Epicardium-Derived Cells with Lamin A/C Haploinsufficiency

Michael V. Zaragoza, Thuy-Anh Bui, Halida P. Widyastuti…·Qing Hua Nie

This study uses single-cell RNA sequencing of patient-derived iPSCs to identify gene expression and pathway dysregulation in LMNA haploinsufficiency affecting cardiomyocytes and epicardium-derived cells.

9 citations

humanscRNA-seq

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BioinformaticsNature MethodsPeer-reviewedJan 23, 2023

Screening cell-cell communication in spatial transcriptomics via collective optimal transport

Zixuan Cang, Yanxiang Zhao, Axel A. Almet…·Qing Hua Nie

This paper introduces COMMOT, a method for inferring cell-cell communication in spatial transcriptomics, and demonstrates its effectiveness across multiple datasets and technologies.

485 citationstop 1%

humanspatial transcriptomics

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Developmental BiologyCell ReportsPeer-reviewedMar 1, 2020

Defining epidermal basal cell states during skin homeostasis and wound healing using single-cell transcriptomics

Daniel Haensel, Suoqin Jin, Peng Sun…·Xing Dai

The paper uses single-cell transcriptomics to define basal cell states in skin homeostasis and wound healing, identifying distinct transcriptional states and their dynamics.

236 citationstop 1%

humanscRNA-seq

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