Author

Aidyn Ubingazhibov

ETH Zurich

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Organism:human· 1 Assay:multiome· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Angela Oliveira PiscoiD· 1 shared Anna LaddachiD· 1 shared Christopher LanceiD· 1 shared Daniel B. BurkhardtiD· 1 shared David Gómez-CabreroiD· 1 shared Fabian Joachim TheisiD· 1 shared Gleb Ryazantsev· 1 shared Jesper N. TegneriD· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioinformatics

Angela Oliveira PiscoORCID

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2 papers

Recent·Most cited

Joint Learning of Node Semantics and Graph Topology using a Transformer in the sparse network regime

Aidyn Ubingazhibov, David Gómez-Cabrero, Narsis A. Kiani, Jesper N. Tegner

The paper predicts missing links in the human Protein-Protein Interaction network using a transformer model that combines semantic and structural features.

bioRxiv · Dec 5, 2023 · PreprintBioinformatics

Multimodal single cell data integration challenge: results and lessons learned

Christopher Lance, Malte D. Luecken, Daniel B. Burkhardt, Robrecht Cannoodt, Pia Rautenstrauch, Anna Laddach, Aidyn Ubingazhibov, Zhi‐Jie Cao, Kaiwen Deng, Sumeer Ahmad Khan, Qiao Liu, Nikolay Russkikh, Gleb Ryazantsev, Uwe Ohler, NeurIPS 2021 Multimodal data integration competition participants, , Fabian Joachim Theis

A NeurIPS 2021 benchmarking competition evaluated over 2600 submissions from 280 competitors across three multimodal single-cell integration tasks using a purpose-built benchmarking dataset and cloud evaluation pipeline.

bioRxiv · Apr 11, 2022 · PreprintBioinformatics