Author

Alexandra Gorbonos

Aalto University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Assay:DNA methylation· 1 Organism:human· 1 Assay:multiome· 1 Approach:statistical model· 1

Frequent Co-Authors

Aleksandr IanevskiiD· 1 shared Filipp Ianevski· 1 shared Jani SaarelaiD· 1 shared Kristen Michelle NaderiD· 1 shared Kristiina RajamäkiiD· 1 shared Lauri A. AaltoneniD· 1 shared Negar SafinianainiiD· 1 shared Niko VälimäkiiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Aleksandr IanevskiORCID

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2 papers

Recent·Most cited

OMIDIENT: Multiomics Integration for Cancer by Dirichlet Auto-Encoder Networks

Negar Safinianaini, Niko Välimäki, Roman Bresson, Alexandra Gorbonos, Kristiina Rajamäki, Lauri A. Aaltonen, Pekka Marttinen

OMIDIENT is a multi-omics integration method that uses Dirichlet auto-encoders to improve clustering, classification, and data reconstruction across cancer types.

Communications Biology · Jul 6, 2026Peer-reviewedBioinformatics

Spatial artefact detection improves reproducibility of drug screening experiments

Aleksandr Ianevski, Kristen Michelle Nader, Swapnil Potdar, Alexandra Gorbonos, Filipp Ianevski, Ziaurrehman Tanoli, Jani Saarela, Tero A. Aittokallio

The paper introduces a control-independent QC method to detect spatial artefacts in drug screening experiments, improving reproducibility between technical replicates and cross-dataset correlation.

iScience · Aug 30, 2025Peer-reviewedBioinformatics